/*
* Copyright 2019-2020 NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
*     http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/

#include <vector>
#include <claraparabricks/genomeworks/utils/genomeutils.hpp>

#include "gtest/gtest.h"

namespace claraparabricks
{

namespace genomeworks
{

namespace genomeutils
{

TEST(GenomeUtilsTest, ReverseComplement)
{
    std::string genome("ATCGAACGTATG");
    std::vector<char> complement(genome.size() + 1);
    complement[genome.length()] = '\0';
    reverse_complement(genome.c_str(), genome.length(), complement.data());
    ASSERT_STREQ(complement.data(), "CATACGTTCGAT");
}

} // namespace genomeutils

} // namespace genomeworks

} // namespace claraparabricks
